Uses of Class
org.simbrain.network.core.Network

Packages that use Network

Package	Description
org.simbrain.network	The network package contains representation of neural networks.
org.simbrain.network.connections	The network.connections package contains classes for creating connecting groups of neurons.
org.simbrain.network.core	The network.core package contains all high level neural network classes, i.e.
org.simbrain.network.desktop	The network.desktop package contains code that is compiled for the Simbrain desktop app, but that is not compiled for non-desktop usage.
org.simbrain.network.groups	The network.groups package contains classes for creating and managing groups of neurons in the network.
org.simbrain.network.gui	The network.gui package contains the Piccolo-based zoomable GUI for designing, editing, and running neural networks.
org.simbrain.network.listeners	The network.listeners package contains all listener class for networks.
org.simbrain.network.subnetworks	The network.subnetworks package contains all bottom-level subclasses of group.
org.simbrain.network.update_actions	The network.update_actions package contains all update action classes.
org.simbrain.network.util	The util package contains utility classes for simnet.

Uses of Network in org.simbrain.network

Methods in org.simbrain.network that return Network

Modifier and Type	Method and Description
Network	NetworkComponent.getNetwork() Returns the root network.

Constructors in org.simbrain.network with parameters of type Network

Constructor and Description
NetworkComponent(java.lang.String name, Network network) Create a new network component.

Uses of Network in org.simbrain.network.connections

Constructors in org.simbrain.network.connections with parameters of type Network

Constructor and Description
RadialSimple(Network network, java.util.List<Neuron> sourceNeurons)

Uses of Network in org.simbrain.network.core

Methods in org.simbrain.network.core that return Network

Modifier and Type	Method and Description
Network	Synapse.getNetwork() Convenience method for getting a reference to the parent root network.
Network	Neuron.getNetwork() Returns the root network this neuron is embedded in.
Network	Synapse.getParentNetwork()

Methods in org.simbrain.network.core with parameters of type Network

Modifier and Type	Method and Description
Synapse	Synapse.instantiateTemplateSynapse(Neuron source, Neuron target, Network parent) A template synapse is a synapse that has no proper references, but is used for setting properties.

Constructors in org.simbrain.network.core with parameters of type Network

Constructor and Description
NetworkTextObject(Network parent, double x, double y) Construct the text object.
NetworkTextObject(Network parent, double x, double y, java.lang.String initialText) Construct the text object with initial text.
NetworkTextObject(Network parent, NetworkTextObject text) Copy constructor.
NetworkUpdateManager(Network network) Construct a new update manager.
Neuron(Network parent) Construct a neuron with all default values in the specified network.
Neuron(Network parent, Neuron n) Copy constructor.
Neuron(Network parent, NeuronUpdateRule updateRule) Construct a specific type of neuron.
Neuron(Network parent, java.lang.String updateRule) Construct a specific type of neuron from a string description.
Synapse(Network newParent, Neuron source, Neuron target, SynapseUpdateRule learningRule) Construct a synapse using a source and target neuron, and a specified learning rule and parent network
Synapse(Network newParent, Neuron source, Neuron target, SynapseUpdateRule learningRule, Synapse templateSynapse) Construct a synapse using a source and target neuron, and a specified learning rule.
Synapse(Network newParent, Synapse synapse) Copy a synapse with a specified new parent.
Synapse(Neuron source, Neuron target, SynapseUpdateRule learningRule, Network parent) Construct a synapse using a source and target neuron, and a specified learning rule.

Uses of Network in org.simbrain.network.desktop

Constructors in org.simbrain.network.desktop with parameters of type Network

Constructor and Description
NetworkPanelDesktop(NetworkDesktopComponent component, Network Network) Construct the desktop extension of network panel.

Uses of Network in org.simbrain.network.groups

Methods in org.simbrain.network.groups that return Network

Modifier and Type	Method and Description
Network	Group.getParentNetwork()

Methods in org.simbrain.network.groups with parameters of type Network

Modifier and Type	Method and Description
NeuronGroup	NeuronGroup.deepCopy(Network newParent)
T	CopyableGroup.deepCopy(Network parentNetwork) Returns a deep copy of a copyable group using the same root network as the original.

Constructors in org.simbrain.network.groups with parameters of type Network

Constructor and Description
Group(Network net) Construct a model group with a reference to its root network.
NeuronGroup(Network network) Create a neuron group without any initial neurons.
NeuronGroup(Network net, int numNeurons) Construct a new neuron group with a specified number of neurons.
NeuronGroup(Network net, java.util.List<Neuron> neurons) Construct a new neuron group from a list of neurons.
NeuronGroup(Network network, NeuronGroup toCopy) Copy constructor.
NeuronGroup(Network network, java.awt.geom.Point2D initialPosition) Create a neuron group without any initial neurons and an initial position.
NeuronGroup(Network net, java.awt.geom.Point2D initialPosition, int numNeurons) Construct a new neuron group with a specified number of neurons.
NeuronLayer(Network net, java.util.List<Neuron> neurons, NeuronLayer.LayerType type) Construct a neuron layer.
Subnetwork(Network net) Create subnetwork group.

Uses of Network in org.simbrain.network.gui

Methods in org.simbrain.network.gui that return Network

Modifier and Type	Method and Description
Network	NetworkPanel.getNetwork()

Methods in org.simbrain.network.gui with parameters of type Network

Modifier and Type	Method and Description
void	NetworkPanel.setNetwork(Network network) Set Root network.

Constructors in org.simbrain.network.gui with parameters of type Network

Constructor and Description
NetworkPanel(Network Network) Create a new Network panel.
NetworkUpdateManagerPanel(Network network, StandardDialog parentDialog) Creates a new update manager panel.

Uses of Network in org.simbrain.network.listeners

Constructors in org.simbrain.network.listeners with parameters of type Network

Constructor and Description
NetworkEvent(Network net, T theThing) Create a network event with one object only.
NetworkEvent(Network net, T oldThing, T theThing) Create a network event with a new and old object.

Uses of Network in org.simbrain.network.subnetworks

Methods in org.simbrain.network.subnetworks with parameters of type Network

Modifier and Type	Method and Description
WinnerTakeAll	WinnerTakeAll.deepCopy(Network newNetwork)
CompetitiveGroup	CompetitiveGroup.deepCopy(Network newParent)

Constructors in org.simbrain.network.subnetworks with parameters of type Network

Constructor and Description
BackpropNetwork(Network network, int[] nodesPerLayer, java.awt.geom.Point2D initialPosition) Construct a new backprop network.
BPTTNetwork(Network network, int numInputNodes, int numHiddenNodes, int numOutputNodes, java.awt.geom.Point2D initialPosition) Constructor specifying root network, and number of nodes in each layer.
CompetitiveGroup(Network newRoot, CompetitiveGroup oldNet) Copy constructor.
CompetitiveGroup(Network root, int numNeurons) Constructs a competitive network with specified number of neurons.
CompetitiveNetwork(Network net, int numCompetitiveNeurons, int numInputNeurons, java.awt.geom.Point2D initialPosition) Construct an SOM Network.
EchoStateNetwork(Network network, int inputNodes, int reservoirNodes, int outputNodes, java.awt.geom.Point2D initialPosition) Constructor with size of layers specified.
EchoStateNetwork(Network network, java.awt.geom.Point2D initialPosition) Creates an empty ESN where neuron groups and synapse groups must be manually added.
FeedForward(Network network, int[] nodesPerLayer, java.awt.geom.Point2D initialPosition) Add the layered network to the specified network, with a specified number of layers and nodes in each layer.
FeedForward(Network network, int[] nodesPerLayer, java.awt.geom.Point2D initialPosition, Neuron inputNeuronTemplate) Construct a feed-forward network.
Hopfield(Network root, int numNeurons) Creates a new Hopfield network.
KWTA(Network root, int k) Default constructor.
LMSNetwork(Network network, int numInputNeurons, int numOutputNeurons, java.awt.geom.Point2D initialPosition) Construct a new LMS Network.
SimpleRecurrentNetwork(Network network, int numInputNodes, int numHiddenNodes, int numOutputNodes) Build an SRN with default activation rules and initial position.
SimpleRecurrentNetwork(Network network, int numInputNodes, int numHiddenNodes, int numOutputNodes, NeuronUpdateRule hiddenNeuronType, NeuronUpdateRule outputNeuronType, java.awt.geom.Point2D initialPosition) Constructor specifying root network, and number of nodes in each layer.
SOMGroup(Network root, int numNeurons) Constructs an SOM network with specified number of neurons.
SOMGroup(Network newRoot, SOMGroup oldNet) Copy constructor
SOMNetwork(Network net, int numSOMNeurons, int numInputNeurons, java.awt.geom.Point2D initialPosition) Construct an SOM Network.
WinnerTakeAll(Network root, int numNeurons) Creates a new winner take all network.
WinnerTakeAll(Network newRoot, WinnerTakeAll oldNet) Copy constructor.

Uses of Network in org.simbrain.network.update_actions

Methods in org.simbrain.network.update_actions with parameters of type Network

Modifier and Type	Method and Description
static ConcurrentBufferedUpdate	ConcurrentBufferedUpdate.createConcurrentBufferedUpdate(Network network) A static factory method that creates a concurrent buffered update class for a network.

Constructors in org.simbrain.network.update_actions with parameters of type Network

Constructor and Description
BufferedUpdate(Network network)
CustomUpdate(Network network, java.io.File file) Create a new custom update action from a file containing the custom script.
CustomUpdate(Network network, java.lang.String script) Create a new custom update action.
PriorityUpdate(Network network)

Uses of Network in org.simbrain.network.util

Methods in org.simbrain.network.util with parameters of type Network

Modifier and Type	Method and Description
static java.util.ArrayList<?>	CopyPaste.getCopy(Network newParent, java.util.ArrayList<?> items) Creates a copy of a list of network model elements: neurons, synapses, and groups.
static java.util.List<java.util.List<Neuron>>	SimnetUtils.getIntermedateLayers(Network network, java.util.List<Neuron> sourceLayer, java.util.List<Neuron> targetLayer) Given a source and target set of neurons, find all layers of neurons connecting them, as follows.

Constructors in org.simbrain.network.util with parameters of type Network

Constructor and Description
CascadingNetworkBuilder(Network network) Create a cascading network builder using default values.
CascadingNetworkBuilder(Network network, int numLayers, int numBrachesPerNeuron) Create a cascading network builder with a specific number of layers and branches per neuron.
NeuronWithMemory(Network parent, java.lang.String updateRule)