See: Description
Package | Description |
---|---|
org.simbrain.console |
The console package contains commands that can be plugged in to the beanshell intepreter (http://www.beanshell.org/).
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org.simbrain.docviewer |
The docviewer package contains classes for managing the document viewer.
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org.simbrain.network |
The
network
package contains representation of neural networks.
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org.simbrain.network.connections |
The network.connections package contains classes for creating connecting groups of neurons.
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org.simbrain.network.core |
The network.core package contains all high level neural network classes, i.e.
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org.simbrain.network.desktop |
The network.desktop package contains code that is compiled for the Simbrain desktop app,
but that is not compiled for non-desktop usage.
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org.simbrain.network.groups |
The network.groups package contains classes for creating and managing groups of neurons in the network.
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org.simbrain.network.gui |
The network.gui package contains the Piccolo-based zoomable GUI for designing, editing, and running neural networks.
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org.simbrain.network.gui.actions |
The network.action package contains the actions for responding to network events.
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org.simbrain.network.gui.actions.connection |
The network.gui.actions.connection package contains action classes for creating and editing synapse connections.
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org.simbrain.network.gui.actions.edit |
The network.gui.actions.edit package contains actions relating to the edit menu and other edit actions.
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org.simbrain.network.gui.actions.modelgroups |
The network.gui.actions.modelgroups package contains actions relating to neurongroups and synapsegroups.
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org.simbrain.network.gui.actions.network |
The network.gui.actions.network package contains general network actions (e.g.
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org.simbrain.network.gui.actions.neuron |
The network.gui.actions.neuron package contains actions relating to neurons (e.g.
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org.simbrain.network.gui.actions.selection |
The network.gui.actions.selection package contains selection actions (e.g.
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org.simbrain.network.gui.actions.synapse |
The network.gui.actions.synapse package contains actions relating to synapses (e.g.
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org.simbrain.network.gui.actions.toolbar |
The network.gui.actions.toolbar package contains actions relating to the toolbar (e.g.
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org.simbrain.network.gui.dialogs |
The network.gui.dialogs package contains all the dialog classes for graphical networks.
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org.simbrain.network.gui.dialogs.connect |
The network.gui.dialogs.connect package contains panel classes for managing network connection types.
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org.simbrain.network.gui.dialogs.connect.connector_panels |
The network.gui.dialogs.connect.connector_panels package contains dialogs and panels for editing, setting, and adjusting the preferences of a connection type.
|
org.simbrain.network.gui.dialogs.group |
The network.gui.dialogs.group package contains dialogs for managing groups, mainly neuron groups and synapse groups
|
org.simbrain.network.gui.dialogs.layout |
The network.gui.dialogs.layout package contains dialogs for managing neuron layout objects.
|
org.simbrain.network.gui.dialogs.network |
The network.gui.dialogs.network package contains dialog classes that manage the creation and editing of
network-level dialog boxes.
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org.simbrain.network.gui.dialogs.neuron |
The network.gui.dialogs.neuron package contains dialog classes that manage the creation and editing of
neuron-level dialog boxes.
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org.simbrain.network.gui.dialogs.neuron.generator_panels |
The network.gui.dialogs.neuron.generator_panels package contains dialogs for neuron generators (currently unused)
|
org.simbrain.network.gui.dialogs.neuron.rule_panels |
The network.gui.dialogs.neuron.generator_panels package contains dialogs for neuron generators (currently unused)
|
org.simbrain.network.gui.dialogs.synapse |
The network.gui.dialogs.synapse package contains dialog classes that manage the creation and editing of
synapse-level dialog boxes.
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org.simbrain.network.gui.dialogs.synapse.plasticity_panels |
The network.gui.dialogs.synpase.plasticity_panels package contains the main panels for editing specific synapse update rules.
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org.simbrain.network.gui.dialogs.synapse.spike_responders |
The network.gui.dialogs.synpase.spike_responders package contains panel classes for setting the various types of response functions of spike repsonders.
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org.simbrain.network.gui.dialogs.text |
The network.gui.dialogs.text package contains classes for managing network text objects .
|
org.simbrain.network.gui.filters |
The network.gui.filters package contains node filters.
|
org.simbrain.network.gui.nodes |
The simbrain.network.nodes package contains Piccolo nodes for various network elements.
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org.simbrain.network.gui.nodes.neuronGroupNodes |
The network.gui.nodes.neuronGroupNodes package contains Piccolo Pnode classes corresponding to neuron group types.
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org.simbrain.network.gui.nodes.subnetworkNodes |
The network.gui.nodes.subnetworkNodes package contains Piccolo Pnode classes corresponding to subnetwork types.
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org.simbrain.network.gui.trainer |
The network.gui.trainer package contains components that can be used to display trainer.
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org.simbrain.network.gui.trainer.subnetworkTrainingPanels |
The network.gui.trainer.subnetworkTrainingPanels package contains panel classes for training subnetwork types.
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org.simbrain.network.layouts |
The network.layouts package contains the neuron layouts.
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org.simbrain.network.listeners |
The network.listeners package contains all listener class for networks.
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org.simbrain.network.neuron_update_rules |
The network.neuron_update_rules package contains code which describes all particular
neuron update rules, which are used when neurons are updated.
|
org.simbrain.network.neuron_update_rules.activity_generators |
The network.neuron_update_rules.activity_generators package contains classes for network elements that generate activity but are not proper update rules
|
org.simbrain.network.neuron_update_rules.interfaces |
The network.neuron_update_rules.interfaces package contains abstract classes and interfaces relating to neuron update.
|
org.simbrain.network.subnetworks |
The network.subnetworks package contains all bottom-level subclasses of group.
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org.simbrain.network.synapse_update_rules |
The network.synapse_update_rules package contains code which describes all particular
synpase or weight types in Simbrain.
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org.simbrain.network.synapse_update_rules.spikeresponders |
The network.synpase_updaterules.spikeresponders package contains methods by which spikes are
converted into activation post-synaptically.
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org.simbrain.network.trainers |
The network.trainers package contains supervised learning algorithms.
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org.simbrain.network.update_actions |
The network.update_actions package contains all update action classes.
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org.simbrain.network.update_actions.concurrency_tools |
The network.update_actions.concurrency_tools package contains utilities for parallel update actions.
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org.simbrain.network.util |
The util package contains utility classes for simnet.
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org.simbrain.network.util.io_utilities |
The network.util.io_utilities package contains classes for specialized serialization needs, e.g.
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org.simbrain.plot |
The plot package contains classes for the implementation of Simbrain plots and charts.
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org.simbrain.plot.actions |
The plot.actions package contains common action classes for plot guis (e.g.
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org.simbrain.plot.barchart |
The plot.barchart package contains classes for creating and editing barcharts.
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org.simbrain.plot.histogram |
The plot.histogram package contains classes for creating and editing a histogram.
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org.simbrain.plot.piechart |
The plot.piechart package contains classes for creating and editing a piechart.
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org.simbrain.plot.projection |
The plot.projection package contains classes for creating and editing a projection.
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org.simbrain.plot.rasterchart |
The plot.rasterchart package contains classes for creating and editing a raster plot chart.
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org.simbrain.plot.scatterplot |
The plot.scatterplot package contains classes for creating and plotting scatter plot (currently unused).
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org.simbrain.plot.timeseries |
The plot.timeseries package contains classes for creating and editing a time series plot.
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org.simbrain.resource |
The resource package contains all the images used in Simbrain, as well as a class which provides access to to those images.
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org.simbrain.util |
The util package contains utilities classes used by multiple Simbrain packages.
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org.simbrain.util.environment |
The util.environment package contains a simple 2-d environment model with
smell sensors, simple motion, and very simple touch.
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org.simbrain.util.genericframe |
The util.genericframe package contains an abstraction that is neutral between JFrames, JInternalFrames, and JDialogs, which is sometimes convenient when, for example, writing code that could be used both in a dialog or an internal desktop frame.
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org.simbrain.util.math |
The util.math package contains associated mathematical utility classes.
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org.simbrain.util.projection |
The util.projection package contains the core api for dimensionality reduction, that is used in the projection plot (but which can also be used in scripts or just as a library).
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org.simbrain.util.propertyeditor |
The util.propertyeditor package contains an api for creating quick and easy edit dialogs.
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org.simbrain.util.propertyeditor.gui |
The util.propertyeditory.gui package contains the main GUI classes for the property editor.
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org.simbrain.util.randomizer |
The util.randomizer package contains classes for creating and managing randomizers, which handles cases where a number must be drawn from a probability distribution.
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org.simbrain.util.randomizer.gui |
The util.randomizer.gui package contains GUI classes for representing and setting properties of a randomizer.
|
org.simbrain.util.scripteditor |
The util.scripteditor package contains the Simbrain script editor GUI code, which wraps around Robert Furtrell's
RSyntaxTextArea
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org.simbrain.util.table |
The util.table package contains a simple table, and a GUI component for viewing this
table.
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org.simbrain.util.widgets |
The simbrain.util.widgets package contains various custom GUI widgets, as well as other utility classes that rely
on images and other graphics resources.
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org.simbrain.workspace |
The workspace package contains the top level container for the other components of Simbrain--the network, world, and gauge(s).
|
org.simbrain.workspace.actions |
The workspace.actions package contains common action classes for workspace components (e.g.
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org.simbrain.workspace.actions.chart |
The workspace.actions.chart package contains actions relating to adding charts.
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org.simbrain.workspace.component_actions |
The workspace.component_actions package contains
actions that can be used in specific workspace components.
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org.simbrain.workspace.gui |
The workspace.gui package contains the main classes relating to the Simbrain desktop, a Piccolo-based zoomable GUI for designing, editing, and running workspace simulations.
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org.simbrain.workspace.gui.couplingmanager |
The workspace.gui.couplingmanager package contains the main classes relating to the workspace coupling manager.
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org.simbrain.workspace.updater |
The workspace.updater package contains code for managing workspace update.
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org.simbrain.world.dataworld |
The world.dataworld package contains the simplest world type, a "dataworld"
which is simply a spreadsheet which sends data to worlds in the form of rows on a
simple table.
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org.simbrain.world.game |
(Currently unused) Was going to hold different "game worlds", e.g.
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org.simbrain.world.game.tictactoe |
(Currently unused) The unfinished beginnings of a tic-tac-toe game.
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org.simbrain.world.midiworld |
(Currently unused) A world which allows sounds to be produced using MIDI interface.
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org.simbrain.world.odorworld |
The world.odorworld package describes a world in which an agent can move
around and smell objects, which are coded as vectors of values which diminish in various
ways as the agent is closer or farther from the agent.
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org.simbrain.world.odorworld.actions |
The odorworld.actions package contains classes of actions (mainly used in menus) for Odor World.
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org.simbrain.world.odorworld.behaviors |
The odorworld.behaviors package contains classes for the implementation of the behavior interface and related classes of the different types of behaviors.
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org.simbrain.world.odorworld.dialogs |
The odorworld.dialog package contains classes for creating and editing dialogs within Odor World.
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org.simbrain.world.odorworld.effectors |
The world.odorworld.effectors package contains effects that can be added to objects to allow
them to move in custom ways.
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org.simbrain.world.odorworld.entities |
The odorworld.entites package contains classes for managing and editing entities in Ordor World.
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org.simbrain.world.odorworld.resources |
The odorworld.resources package contains a resource manager class for retriving resources from the program.
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org.simbrain.world.odorworld.sensors |
The odorworld.sensors package contains classes of different types of sensors for receiving information from the Odor World envirnoment.
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org.simbrain.world.oscworld |
(Currently unused) A world which allows sounds to be produced using open sound control.
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org.simbrain.world.textworld |
The world.textworld package describes a world in which strings of
text are converted into vectors.
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org.simbrain.world.textworld.dictionary |
The textworld.dictionary package contains classes for managing and editing the dictionary in Text World.
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org.simbrain.world.threedee |
(Currently unused) The 3D world is a simple full three dimensional environment containing agents that can be
controlled by and send information to external couplings.
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org.simbrain.world.threedee.sensors |
(Currently unused) This package contains the code for the 3-D world sensors.
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org.simbrain.world.visionworld |
The vision world package contains classes for the implementation of Vision World.
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org.simbrain.world.visionworld.action |
The visionworld.action package contain classes for creating, editing and managing actions within Vision World.
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org.simbrain.world.visionworld.dialog |
The visionworld.dialog package contains classes for creating and editing dialogs within Vision World.
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org.simbrain.world.visionworld.filter |
The visionworld.filter package contains classes for the implementation of the filter interface.
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org.simbrain.world.visionworld.filter.editor |
The visionworld.filter.editor package contains classes of the different types of filter editors.
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org.simbrain.world.visionworld.node |
The visionworld.node package contains Vision World piccolo nodes and related classes.
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org.simbrain.world.visionworld.node.editor |
The visionworld.node.editor package contain the code for Vision World node editors.
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org.simbrain.world.visionworld.pixelmatrix |
The visionworld.pixelmartix package contains classes for the implementation of the PixelMatrix interface.
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org.simbrain.world.visionworld.pixelmatrix.editor |
The visionworld.pixelmatrix.editor package contains classes of the different types of pixel matrix editors.
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org.simbrain.world.visionworld.sensormatrix |
The visionworld.sensormatrix package contains classes for the implementation of the SensorMatrix interface.
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org.simbrain.world.visionworld.sensormatrix.editor |
The visionworld.sensormatrix.editor package contains classes of sensor matrix editors.
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